Research is an essential part of university activity. The evaluation of research activities is not only of scientific, but also of practical interest. Currently, however, the research evaluation is used primarily either for the analysis of the activities of a university as a whole or for tackling specific tasks, usually related to the financing of research projects. The use of monitoring systems for research activities as part of the internal university management has not been sufficiently studied. Therefore, the purpose of the research, which was conducted at Vinnytsia Mykhailo Kotsiubynskyi State Pedagogical University (Ukraine) over the course of 5 years, was to identify and critically evaluate the main practical applications of such monitoring in management activities. The monitoring system was created through the use of expert evaluation method. Information was collected with mandatory input control. The results of monitoring can be used for creating an information database, performing comparative analysis, making evaluation of research activities of a university as a whole and implementing the control function. Analysis of the research evaluation proved its positive impact on the advancement of science at the university. Based on the obtained results it is possible to solve organizational, financial and professional issues, make important management decisions. At the same time, it is necessary to consider the risks that may arise during the practical implementation. Emphasized is the universal character of proposed directions that can be used in the management of various universities.